Technology

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I ran across labmeeting.com earlier this week.  The site is a cross between LinkedIn and Endnote:

Labmeeting is a tool for scientists. It was created to help with those things that make doing science needlessly difficult. These include:

  • Finding someone at Wisconsin who works on aging in yeast
  • Remembering whether the paper about helix bundles was 8753.pdf or science.pdf
  • Moving journal club to Tuesday
  • Finding out the next time someone gives a seminar on spectroscopy

… and, above all, sharing one’s interests, expertise, and discoveries with others.

With this tool, you can also upload your Endnote libraries (and associated articles), so you have access to your “paper collection” from anywhere. Sharing references with colleagues is a breeze, and there’s even a place to upload lab-specific protocols and post lab events.

Now, I’m off to invite the rest of my lab to join and start uploading papers!

ResearchBlogging.orgFriedlaender et al. have a recent article in PLos Genetics. Titled The Genetic Structure of Pacific Islanders, the study used 687 microsatellite and 203 indel loci in nearly 1000 individuals from 41 populations in and around Oceania, in order to determine the genetic origins of these populations.

The researchers found

only a modest association between language and genetic affiliation. Oceanic languages were introduced and dispersed around the islands within the last 3,300 years, but there was apparently only a small infusion of accompanying “Austronesian” ancestry that has survived…suggest[ing] that Oceanic languages were adopted by many formerly Papuan-speaking groups, while at the same time there was little genetic influence or marital exchange. At least in Near Oceania, rates of language borrowing and language adoption have been faster and more pervasive than rates of genetic admixture.

Two aspects of this study appeal to me.

  1. Whole genome studies appear to be the wave of the future for anthropological genetic research, with the advent of new technologies that make these types of analyses feasible.
  2. It was published in an open access journal, by well-respected members of the field. There’s an interesting discussion of open-access publishing at apophenia, in which she emphasizes the importance of tenured faculty supporting open-access.

Friedlaender JS, Friedlaender FR, Reed FA, Kidd KK, Kidd JR, Chambers GK, Lea RA, Loo JH, Koki G, Hodgson JA, Merriwether DA, & Weber JL (2008). The genetic structure of Pacific Islanders. PLoS genetics, 4 (1) PMID: 18208337

SciVee

SciVee Logo

The Public Library of Science (PLoS) has partnered with the National Science Foundation (NSF) and the San Diego Computer Supercomputer Center (SDSC) to create SciVee, which

allows scientists to communicate their work as a multimedia presentation incorporated with the content of their published article. Other scientists can freely view uploaded presentations and engage in virtual discussions with the author and other viewers. SciVee also facilitates the creation of communities around specific articles and keywords. Use this medium to meet peers and future collaborators that share your particular research interests.

It’s still in alpha, so there’s not a lot of content yet. SciVee resembles a cross between LinkedIn and YouTube for scientists, and looks promising. Stay tuned.

ResearchBlogging.org An old joke, but serious business for anthropologists and archaeologists studying the introduction of poultry to South America. Introduction of chickens to South America by European explorers had been proposed (or assumed), but Pizarro documented the presence of chickens among the Inca at contact. Researchers at the University of Aukland, using commensal modeling (studying distribution patterns of animals typically found with humans, such as rats, dogs, and domestic species), came to an interesting conclusion published this week in the Proceedings of the National Academy of Sciences.

Examining mitochondrial DNA sequences from 12 samples collected at El-Arenal-1 in Chile, Alice Storey and colleagues found that the sequences match those found at prehistoric sites in Polynesia – Mele Havea in Tonga (2,000-1,550 BP) and Fatu-ma-Futi in American Samoa (AD 700-1390). The chicken bones found at El Arenal-1 were radiocarbon dated to between 1304-1424 AD, meaning they were present on the west coast of South America prior to Spanish or Portuguese contact on the east coast of the continent around AD 1500.

Map of Polynesia

Radiocarbon and DNA evidence for a pre-Columbian introduction of Polynesian chickens to Chile is an important study in two ways. One, it provides the first direct proof of Polynesian contact with South America. (See this post). And since chickens aren’t known for being great fliers, they must have instead come by boat, or in this case, Polynesian sewn plank canoes. Two, it demonstrates what DNA analysis of other types of archaeological remains (not just human) can tell us about human migration patterns.


Image adapted from Storey, A., Ramirez, J., Quiroz, D., Burley, D., Addison, D., Walter, R., Anderson, A., Hunt, T., Athens, J., Huynen, L., & Matisoo-Smith, E. (2007). Radiocarbon and DNA evidence for a pre-Columbian introduction of Polynesian chickens to Chile Proceedings of the National Academy of Sciences, 104 (25), 10335-10339 DOI: 10.1073/pnas.0703993104

Dr. Richard Leakey, famed paleoanthropologist, has sounded a warning concerning the fate of the world’s great apes, but not from the threat you might expect. While Leakey acknowledges that our closest relatives are at risk due to climate change caused by global warming, he also warned of the risk to biodiversity, including apes, as a result of the human response to global warming, namely the increased reliance on biofuels (think ethanol or biodiesel).

He said that “great swathes” of forest had already been destroyed in South Asia to make way for palm oil plantations [used in personal care products], and this had had a dramatic impact on orangutans, which currently number 50,000.

Sumatran Orangutan

The pressure to grow cash crops has the potential to accelerate habitat destruction in the world’s poorest countries. Even worse, clear cutting indigenous forests could exacerbate the effects of global warming by decreasing habitats which absorb greenhouse gases.

“It does seem that we cannot stop development, but it does also seem that perhaps we can stop development where critical species are threatened.”

As we attempt to decrease our dependence on fossil fuels and find clean energy alternatives, we must also protect biodiversity on this planet, and ensure that third world countries have sustainable economies, so that they aren’t forced to destroy their natural resources to survive.

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