Kanzi News

My physical anthropology buddies will recognize the name.  Kanzi is a bonobo who learned to communicate with researchers using lexical symbols while growing up at the Yerkes Primate Center.

News today from the Great Ape Trust is that Kanzi is now the father of an infant male named Teco. After many years of showing my students the episode of Nova, Can Chimps Talk? I feel like a proud aunt.  Felicitations!

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Summer’s here.  I capped off my semester with graduation. Even though I defended my dissertation last June, I was just over the deadline to graduate last Spring, so I got to graduate with two of my lab buddies, instead. Totally worth the wait.

That's me on the right, with another PhD (left) and master's candidate (center) from my grad lab.

***

The last few weeks of the Spring semester leading up to graduation were rough, trying to meet deadlines for coursework and other projects.  This semester I finished:

  • Intro to Epidemiology (two exams, four quizzes, a final presentation and a paper)
  • Grant Writing (a draft potential R03 grant)
  • Biostats II (a final project)

and submitted:

  • one project to IRB
  • one grant proposal to a local foundation
  • one application for a summer workshop
  • one poster for an international conference
  • one poster for the national meetings
  • one poster for the departmental program annual symposium

My semester, especially towards the end, felt a bit like this

Except without the tutu.

For the last several weeks, I was jumping from one deadline to another, having just a few days between to work on the next project on the list.  Not surprisingly, I’ve felt the need to have a way to keep more on top of things: projects, due dates, meetings. While I was writing my dissertation, I had used LifeBalance, but decided against upgrading because their iPhone app apparently has issues, and I had stopped using the desktop version over a year ago because it just wasn’t working for me and I didn’t want to pay for the update.  I downloaded the trial version of Things, but decided it didn’t fit my current (lack of) workflow, and required adaptations that didn’t really work for me.  Same for Midnight Inbox. I settled on OmniFocus instead, personal task management software based on David Allen’s Getting Things DoneProfHacker has a nice series of posts on applying the concept as an academic, including an Introduction, Contexts and Academic Work, Mind-sweeping, and Managing Project Files.

I’ve slowly been adding projects, setting contexts and due dates. I’ve been using OmniFocus for about three weeks, but I haven’t completed a mind-sweep yet, partly due to lack of time (cleaning up from the end of semester crazy), partly because I’m still in the process of learning the system (reviewing podcasts, screencasts, and blogs about implementation), and partly because I’m a little afraid to have all of my commitments down on paper. I’m still figuring out exactly what should go on the list. Everything? Or just those out of the ordinary things that I might forget if I don’t write them down? Most of what I have set up so far are work projects, and I feel already like I have a better idea of where things are and what needs to be done next.

That’s good, because my summer is shaping up to be very busy, even without taking classes.  Right now, the project list looks like this:

  • resubmit proposal to IRB
  • write three articles from dissertation
  • write/contribute to other articles as assigned
  • write book chapter
  • help with PI R01 submission
  • present research idea to local partner organization
  • meet with biostatistics re. R03 proposal
  • develop syllabus/course description for potential class
  • plan analysis of samples from PI’s current R01
  • create a career development plan

It feels really good to be finishing up the first year of my postdoc, despite feeling like I’m eating an apple while juggling knives balanced on a rickety table sometimes.  I’m hoping GTD and OmniFocus can alleviate some of that end of semester panic in the future.

For the other postdocs out there, what strategies/tips do you have for task management?

Image credit: Graduation photo courtesy of lab buddies. Knife juggler photo Creative Commons licensed by peter.bryant via Flickr.

Conferencing with Kids

I, along with several of my postdoc friends, spent last week in Albuquerque, New Mexico, at the national AAPA and HBA conferences.  As a grad student, I attended these conferences several times, a couple of times with my oldest daughter in tow.  She was 6 when our department hosted the national meetings, and 12 when we went to Philadelphia.  This is the first year, however, that I went to the conference with an infant. That adds a whole new level of complexity to the experience.

Greetings from Albuquerque

Now that we’re home and reasonably rested, it seems like a good time to share a few tips for having a successful conference experience with little ones along (noting that all of these depend on your personal circumstances/budget).

  • For getting on and off the plane, a baby sling is wonderful.  We have an Ergo, so Charlie rode strapped to my chest while boarding, disembarking, through baggage claim, and on shuttles. And I still had my hands free to carry stuff.
  • If possible, have your spouse come along.  Having a dedicated caregiver makes those poster sessions a little less stressful (the sling comes in handy here, too, since he could walk around with her while she napped), and made it possible for me to attend some podium sessions uninterrupted.
  • Rent a car.  And a car seat.  Waiting for a shuttle is tedious enough without a fussy baby. And by renting the car seat you don’t have to worry about yours being damaged in transit.
  • Since we’re still breastfeeding, I tried to take breaks from conference activities every 3-4 hours to feed her. The conference hotel had a nice sitting room off the ladies restroom, which was frequented by several breastfeeding moms, but many of us also breastfed during podium sessions if necessary (and if our babies we’re being disruptive).  I just sat near the door in case she got cranky.
  • Take naps. On most days, we’d all be strung out by around 3 pm, so we’d head back to our room and rest for a while before dinner.
  • Baby proof your hotel room – unplug unnecessary items (lamps, phones, clocks) so baby can’t chew on the cords, put trashcans out of reach,  close the bathroom door, block the dresser drawers with a chair or suitcase to prevent pinched fingers, and give your baby a safe place to explore while you catch up on work or have a little siesta.  One thing I wish we had done, bring some outlet covers for the wall sockets.
  • Get a cheap umbrella stroller – you can gate check it, and it’s lightweight and small enough to get around in restaurants or while playing tourist.
  • Make friends with the other moms.  We gravitate towards each other, anyway, but the conference moms know exactly the level of crazy you’re dealing with, and may have some useful strategies for handling it while still being professional.

Image credit: K. Beaty

Genomics Online

Several of the items I’ve run across while surfing this week involve genomics (not surprising, given my job).

  • First, from the National Human Genome Research Institute GenomicsCareers: Find Your Future, a website detailing the myriad career choices in the emerging field of genomics. With interactive videos and career profiles, a nice resource for the budding scientist. This one is on my list to share with my oldest, who has expressed an interest in forensics and neuroscience.
  • Next, HuGE Navigator, “An integrated, searchable knowledge base of genetic associations and human genome epidemiology.”  BiteSizeBio has a nice review of the high points here and here. I realize these posts are from over a year ago, but I was trapped in dissertation purgatory at the time.
  • Finally, Genomicus, a genome browser that lets users compare genomes across species.

Here’s the Genomicus output from the FOXP2 gene,with the human gene at the bottom of the figure, and a handy demo video.

[T]wo subjects which moved my Father perhaps more deeply than any others were cruelty to animals & slavery – his detestation of both was intense, and his indignation was overwhelming in case of any levity or want of feeling on these matters.  – William Darwin

The trick to finishing books this year is getting up early, apparently.  I managed to get through the last four chapters of Darwin’s Sacred Cause this weekend while the baby slept. In the process, I’ve had to come to terms with  the disquieting beginnings of my own discipline and the bloody and violent antecedents of the town I’ve called home for the past dozen years.

Charles Darwin and Abraham Lincoln share a birthday, but they also share a tumultuous period in history. I’ve always been struck by the realization that Origin of Species was published just a few short years before the Civil War. After reading Darwin’s Sacred Cause, I get the idea that it was not coincidental.  Yes, Darwin sat on his big idea for 20 years, publishing travel journals, works on geology, and a four-volume monograph on barnacles. Why barnacles?  First, to document the amount of variation present in species, which natural selection requires to operate; and second, to establish himself as a knowledgeable naturalist in the eyes of the Royal Society, and provide the credentials needed to discuss his theory. In addition, describing the complete lineage of these marine arthropods provided an example of common descent. Barnacles were a proxy for a much more controversial topic – human variation.

Not science

Human variation is what I study as a biological (or physical) anthropologist. Physical anthropology has its roots, at least in part according to the authors, in phrenology. That’s the pseudo-science of determining temperament from the shape of the skull.  Not surprisingly, given that phrenology developed in Europe, Europeans were said to have the most refined skulls, and phrenological findings were used to justify slavery, something Darwin’s entire family was against.  Darwin would not have been impressed with the physical anthropologists of his day, especially in America, where differences in skull morphology were seen as “proof” of a polygenic origin of humans. According to the polygenists, each human “race” had its own pair of progenitors and were separately created, an idea used to justify all sorts of atrocities, since non-Europeans were seen as less than human. Darwin held the monogenist view, and saw all peoples as descended from a common ancestor, meaning they were all worthy of being treated with dignity and respect, and slavery was unjustified.  Actually, he took it farther than that, and saw a common ancestor for all living things.

It is absurd to talk of one animal being higher than another.–We consider those, where the cerebral structure/intellectual faculties most developed, as highest.–A bee doubtless would when the instincts were. – Charles Darwin

He spent a number of years studying pigeons, just to demonstrate that all the fancy breeds (“races”) descended from a common ancestor. Another proxy for human variation.

Darwin’s Pigeons – from Variation in Animals and Plants under Domestication (1868), with the common ancestor, the rock dove, in the center.

The tension between these two worldviews played out in my hometown, before the Civil War even started. In 1856, Sheriff Samuel Jones led a pro-slavery posse into Lawrence, Kansas, which had been established by abolitionist settlers two years before, sacked the town, burned the Free State Hotel, smashed the presses, and killed an antislavery supporter.

The ruins of the Free State Hotel

Darwin’s mentor and friend, geologist Charles Lyell, who encouraged him to publish his ideas on natural selection, was a Southern sympathizer. The Anthropological Society of London was founded in 1863, in the midst of the Civil War, with three Confederate agents on the council, whose sole purpose was to push a pro-slavery agenda.

Plaque on the site of the present-day Eldridge Hotel, 8th and Massachusetts, Lawrence, Kansas.

Plaque marking the site of the Free State Hotel, downtown Lawrence.

That’s what Darwin was up against.  Not just other naturalists, but Victorian society. No wonder he waited two decades to publish.

My discipline has come a long way since Darwin’s day.  The American Anthropological Association’s “Statement on Race and Intelligence” states in part:

WHEREAS all human beings are members of one species, Homo sapiens, and

WHEREAS, differentiating species into biologically defined “races” has proven meaningless and unscientific as a way of explaining variation (whether in intelligence or other traits),

THEREFORE, the American Anthropological Association urges the academy, our political leaders and our communities to affirm, without distraction by mistaken claims of racially determined intelligence, the common stake in assuring equal opportunity, in respecting diversity and in securing a harmonious quality of life for all people.

And the American Association of Physical Anthropologists has their own “Statement on Biological Aspects of Race,” which says:

Physical, cultural and social environments influence the behavioral differences among individuals in society. Although heredity influences the behavioral variability of individuals within a given population, it does not affect the ability of any such population to function in a given social setting. The genetic capacity for intellectual development is one of the biological traits of our species essential for its survival. This genetic capacity is known to differ among individuals. The peoples of the world today appear to possess equal biological potential for assimilating any human culture. Racist political doctrines find no foundation in scientific knowledge concerning modern or past human populations.

Image Credits:

Ryan Somma’s flickr stream

Wikimedia Commons

Dr. Steven M. Carr’s website

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